Genotyping by low-coverage whole-genome sequencing in intercross pedigrees from outbred founders: a cost-efficient approach.

Yanjun ZanThibaut PayenMette LillieChrista F HonakerPaul B SiegelÖrjan Carlborg

Published in: Genetics, selection, evolution : GSE (2019)

A method and software for inferring founder mosaic genotypes in intercross offspring from low-coverage whole-genome sequencing in pedigrees from heterozygous founders are described. They provide high-quality, high-resolution genotypes in a time- and cost-efficient manner. The software is freely available at https://github.com/CarlborgGenomics/Stripes .

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