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Sampling strategies to capture single-cell heterogeneity.

Satwik RajaramLouise E HeinrichJohn D GordanJayant AvvaKathy M BonnessAgnieszka K WitkiewiczJames S MalterChloe E AtreyaRobert S WarrenLani F WuSteven J Altschuler
Published in: Nature methods (2017)
Advances in single-cell technologies have highlighted the prevalence and biological significance of cellular heterogeneity. A critical question researchers face is how to design experiments that faithfully capture the true range of heterogeneity from samples of cellular populations. Here we develop a data-driven approach, illustrated in the context of image data, that estimates the sampling depth required for prospective investigations of single-cell heterogeneity from an existing collection of samples.
Keyphrases
  • single cell
  • rna seq
  • high throughput
  • risk factors
  • electronic health record
  • optical coherence tomography