Molecular Characterization of Carbapenemase-Producing Pseudomonas aeruginosa of Czech Origin and Evidence for Clonal Spread of Extensively Resistant Sequence Type 357 Expressing IMP-7 Metallo-β-Lactamase.
Costas C PapagiannitsisMatej MedveckyKaterina ChudejovaAnna SkalovaVeronika RotovaPetra SpanelovaVladislav JakubuHelena ZemlickovaJaroslav Hrabaknull nullPublished in: Antimicrobial agents and chemotherapy (2017)
The objective of this study was to perform molecular surveillance for assessing the spread of carbapenemase-producing Pseudomonas aeruginosa in Czech hospitals. One hundred thirty-six carbapenemase-producing isolates were recovered from 22 hospitals located throughout the country. Sequence type 357 (ST357) dominated (n = 120) among carbapenemase producers. One hundred seventeen isolates produced IMP-type (IMP-7 [n = 116] and IMP-1 [n = 1]) metallo-β-lactamases (MβLs), 15 produced the VIM-2 MβL, and the remaining isolates expressed the GES-5 enzyme. The blaIMP-like genes were located in three main integron types, with In-p110-like being the most prevalent (n = 115). The two other IMP-encoding integrons (In1392 and In1393) have not been described previously. blaVIM-2-carrying integrons included In59-like, In56, and a novel element (In1391). blaGES-5 was carried by In717. Sequencing data showed that In-p110-like was associated with a Tn4380-like transposon inserted in genomic island LESGI-3 in the P. aeruginosa chromosome. The other integrons were also integrated into the P. aeruginosa chromosome. These findings indicated the clonal spread of ST357 P. aeruginosa, carrying the IMP-7-encoding integron In-p110, in Czech hospitals. Additionally, the sporadic emergence of P. aeruginosa producing different carbapenemase types, associated with divergent or novel integrons, punctuated the ongoing evolution of these bacteria.
Keyphrases
- gram negative
- klebsiella pneumoniae
- acinetobacter baumannii
- multidrug resistant
- pseudomonas aeruginosa
- drug resistant
- healthcare
- escherichia coli
- cystic fibrosis
- copy number
- biofilm formation
- antibiotic resistance genes
- public health
- dna methylation
- gene expression
- electronic health record
- amino acid
- data analysis
- late onset
- deep learning
- machine learning
- transcription factor
- wastewater treatment