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Genome-wide association study reveals a QTL and strong candidate genes for umbilical hernia in pigs on SSC14.

Eli GrindflekMarianne H S HansenSigbjørn LienMaren van Son
Published in: BMC genomics (2018)
A highly significant QTL for umbilical hernia in Norwegian Landrace pigs was detected around 50 Mb on SSC14. Resequencing of candidate genes within the region revealed SNPs within LIF and OSM highly associated with the trait. However, because of extended LD within the region, studies in other populations and functional studies are needed to determine whether these variants are causal or not. Still without this knowledge, SNPs within the region can be used as genetic markers to reduce incidences of umbilical hernia in Norwegian Landrace pigs.
Keyphrases
  • genome wide
  • genome wide association study
  • copy number
  • healthcare
  • dna methylation
  • case control
  • high density
  • genetic diversity