Cost-effective, high-yield production of Pyrobaculum calidifontis DNA polymerase for PCR application.
Kashif MasehSyed Farhat AliShazeel AhmadNaeem RashidPublished in: Preparative biochemistry & biotechnology (2022)
Polymerase Chain Reaction (PCR) is widely used for cloning, genetic engineering, mutagenesis, detection and diagnosis. A thermostable DNA polymerase is required for PCR. Here we describe low-cost and high-recovery production of Pyrobaculum calidifontis DNA polymerase ( Pca -Pol). The gene was cloned in pET-28a and expressed in Escherichia coli BL21CodonPlus. Gene expression conditions were optimized. Eventually, gene expression was induced with 0.1 mM IPTG for 3 hours at 37 °C. Recombinant Pca -Pol produced was purified to homogeneity by immobilized metal-ion affinity chromatography yielding around 9000 U of Pca -Pol per liter of the culture with a recovery of 92%. Stability and PCR amplification efficiency of Pca -Pol was tested under various storage conditions with highest efficiency in 25 mM Tris-Cl buffer (pH 8.5) containing 0.1% Tween 20, 0.2 mg/mL BSA and 20% glycerol. Under this condition, no loss in PCR activity of Pca -Pol was observed, even after one year of storage. Repeated freeze-thaw, however, deteriorated enzyme activity of Pca -Pol. 55% PCR amplification activity retained after 7 prolong freeze-thaw cycles (freezing overnight at -20 °C and thawing for 45 minutes at 28 °C). Purified Pca -Pol possessed 3'-5' exonuclease (proofreading) activity and is expected to have greater fidelity as compared to Taq polymerase which does not have proofreading activity.
Keyphrases
- gene expression
- real time pcr
- escherichia coli
- nucleic acid
- cell free
- circulating tumor
- low cost
- single molecule
- dna methylation
- genome wide
- computed tomography
- copy number
- structural basis
- label free
- resting state
- pseudomonas aeruginosa
- drug induced
- ms ms
- functional connectivity
- diabetic rats
- high speed
- liquid chromatography
- biofilm formation
- klebsiella pneumoniae