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scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data.

Isar NassiriBenjamin FairfaxAngela LeeYanxia WuDavid BuckPaolo Piazza
Published in: BMC genomics (2023)
The open-source R tool will allow examining biases and outliers over biological and technical measures, and objective selection of optimal cluster numbers before downstream analysis. scQCEA is available at https://isarnassiri.github.io/scQCEA/ as an R package. Full documentation, including an example, is provided on the package website.
Keyphrases
  • single cell
  • quality control
  • rna seq
  • electronic health record
  • high throughput
  • big data
  • machine learning
  • deep learning