Developing better digital health measures of Parkinson's disease using free living data and a crowdsourced data analysis challenge.
Solveig K SiebertsHenryk BorzymowskiYuanfang GuanYidi HuangAyala MatznerAlex PageIzhar Bar-GadBrett Beaulieu-JonesYuval El-HananiJann GoschenhoferMonica JavidniaMark S KellerYan-Chak LiMohammed SaqibGreta SmithAna StanescuCharles S VenutoRobert Zielinskinull nullArun JayaramanLuc J W EversLuca FoschiniAlex MariakakisGaurav PandeyNicholas ShawenPhil SynderLarsson OmbergPublished in: PLOS digital health (2023)
One of the promising opportunities of digital health is its potential to lead to more holistic understandings of diseases by interacting with the daily life of patients and through the collection of large amounts of real-world data. Validating and benchmarking indicators of disease severity in the home setting is difficult, however, given the large number of confounders present in the real world and the challenges in collecting ground truth data in the home. Here we leverage two datasets collected from patients with Parkinson's disease, which couples continuous wrist-worn accelerometer data with frequent symptom reports in the home setting, to develop digital biomarkers of symptom severity. Using these data, we performed a public benchmarking challenge in which participants were asked to build measures of severity across 3 symptoms (on/off medication, dyskinesia, and tremor). 42 teams participated and performance was improved over baseline models for each subchallenge. Additional ensemble modeling across submissions further improved performance, and the top models validated in a subset of patients whose symptoms were observed and rated by trained clinicians.
Keyphrases
- healthcare
- data analysis
- electronic health record
- end stage renal disease
- big data
- public health
- newly diagnosed
- ejection fraction
- mental health
- physical activity
- chronic kidney disease
- prognostic factors
- deep learning
- risk assessment
- patient reported outcomes
- health information
- machine learning
- adverse drug
- patient reported
- climate change
- human health
- rna seq
- resistance training
- high intensity