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The purplish bifurcate mussel Mytilisepta virgata gene expression atlas reveals a remarkable tissue functional specialization.

Marco GerdolYuki FujiiImtiaj HasanToru KoikeShunsuke ShimojoFrancesca SpazzaliKaname YamamotoYasuhiro OzekiAlberto PallaviciniHideaki Fujita
Published in: BMC genomics (2017)
We highlight that one of the most striking features of the M. virgata transcriptome is the high abundance and diversification of lectin-like transcripts, which pertain to different gene families and appear to be expressed in particular in the digestive gland and in the gills. Therefore, these two tissues might be selected as preferential targets for the isolation of molecules with interesting carbohydrate-binding properties. In addition, by molecular phylogenomics, we provide solid evidence in support of the classification of M. virgata within the Brachidontinae subfamily. This result is in agreement with the previously proposed hypothesis that the morphological features traditionally used to group Mytilisepta spp. and Septifer spp. within the same clade are inappropriate due to homoplasy.
Keyphrases
  • gene expression
  • single cell
  • genome wide
  • dna methylation
  • machine learning
  • genome wide identification
  • deep learning
  • copy number
  • rna seq