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Plankton classification with high-throughput submersible holographic microscopy and transfer learning.

Liam MacNeilSergey MissanJunliang LuoThomas TrappenbergJulie LaRoche
Published in: BMC ecology and evolution (2021)
These results show compelling baselines for classifying holographic plankton images, both rare and plentiful, including several dinoflagellate and diatom groups. These results also support a broader potential for deployable holographic microscopes to sample diverse microbial eukaryotic communities, and its use for high-throughput plankton monitoring.
Keyphrases
  • high throughput
  • deep learning
  • single cell
  • machine learning
  • microbial community
  • convolutional neural network
  • high resolution
  • single molecule
  • human health
  • risk assessment