xcore: an R package for inference of gene expression regulators.
Maciej MigdałTakahiro ArakawaSatoshi TakizawaMasaaki FurunoHarukazu SuzukiErik ArnerCecilia Lanny WinataBogumił KaczkowskiPublished in: BMC bioinformatics (2023)
xcore provides a simple analytical framework for gene expression modeling using linear models that can be easily incorporated into differential expression analysis pipelines. Taking advantage of public ChIP-seq databases, xcore can identify meaningful molecular signatures and relevant ChIP-seq experiments.