TopCoW: Benchmarking Topology-Aware Anatomical Segmentation of the Circle of Willis (CoW) for CTA and MRA.
Kaiyuan YangFabio MusioYihui MaNorman JuchlerJohannes C PaetzoldRami Al-MaskariLuciano HöherHongwei Bran LiIbrahim Ethem HamamciAnjany SekuboyinaSuprosanna ShitHoujing HuangDiana WaldmannstetterFlorian KoflerFernando NavarroMartin MentenIvan EzhovDaniel RueckertIris VosYnte RuigrokBirgitta VelthuisHugo KuijfJulien HämmerliCatherine WursterPhilippe BijlengaLaura WestphalJeroen BisschopElisa ColomboHakim BaazaouiAndrew MakmurJames HallinanBene WiestlerJan S KirschkeRoland WiestEmmanuel MontagnonLaurent Letourneau-GuillonAdrian GaldranFrancesco GalatiDaniele FalcettaMaria A ZuluagaChaolong LinHaoran ZhaoZehan ZhangSinyoung RaJongyun HwangHyunjin ParkJunqiang ChenMarek WodzinskiHenning MüllerPengcheng ShiWei LiuTing MaCansu YalçinRachika E HamadacheJoaquim SalviXavier LladoUma Maria Lal-Trehan EstradaValeriia AbramovaLuca GiancardoArnau OliverJialu LiuHaibin HuangYue CuiZehang LinYusheng LiuShunzhi ZhuTatsat R PatelVincent M TutinoMaysam OrouskhaniHuayu WangMahmud Mossa-BashaChengcheng ZhuMaximilian R RokussYannick KirchhoffNico DischJulius HolzschuhFabian IsenseeKlaus Maier-HeinYuki SatoSven HirschSusanne WegenerBjoern MenzePublished in: ArXiv (2024)
The Circle of Willis (CoW) is an important network of arteries connecting major circulations of the brain. Its vascular architecture is believed to affect the risk, severity, and clinical outcome of serious neuro-vascular diseases. However, characterizing the highly variable CoW anatomy is still a manual and time-consuming expert task. The CoW is usually imaged by two angiographic imaging modalities, magnetic resonance angiography (MRA) and computed tomography angiography (CTA), but there exist limited public datasets with annotations on CoW anatomy, especially for CTA. Therefore we organized the TopCoW Challenge in 2023 with the release of an annotated CoW dataset. The TopCoW dataset was the first public dataset with voxel-level annotations for thirteen possible CoW vessel components, enabled by virtual-reality (VR) technology. It was also the first large dataset with paired MRA and CTA from the same patients. TopCoW challenge formalized the CoW characterization problem as a multiclass anatomical segmentation task with an emphasis on topological metrics. We invited submissions worldwide for the CoW segmentation task, which attracted over 140 registered participants from four continents. The top performing teams managed to segment many CoW components to Dice scores around 90%, but with lower scores for communicating arteries and rare variants. There were also topological mistakes for predictions with high Dice scores. Additional topological analysis revealed further areas for improvement in detecting certain CoW components and matching CoW variant topology accurately. TopCoW represented a first attempt at benchmarking the CoW anatomical segmentation task for MRA and CTA, both morphologically and topologically.