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Does Ionic Screening Lower Activation Barriers for Conformational Transitions in Proteins?

Jan M AntosiewiczMaciej Długosz
Published in: The journal of physical chemistry. B (2018)
In this work, we investigated the kinetics of binding of hen egg-white lysozyme with tri- N-acetylglucosamine in aqueous solutions, at two values of pH, 3.2 and 11, as a function of ionic strength, by a stopped-flow method with tryptophyl fluorescence observation of the transients. We analyzed registered reaction progress curves by employing numerical integration of appropriate chemical master equations. We discriminated between several binding models and established that the process observed in experiments follows a two-step mechanism, composed of four elementary stages: diffusional formation of an encounter complex, dissociation of the encounter complex, conformational transition of the encounter complex to the final complex, and the reverse transformation, i.e., from the final complex to the encounter complex. We evaluated rate constants of these elementary stages and determined their dependencies on solution ionic strength. Regardless of solution pH, rate constants of both forward and reverse conformational transitions increase with an increasing ionic strength. This suggests that ionic screening of intramolecular electrostatic interactions may act to lower the activation barrier for conformational transition in proteins.
Keyphrases
  • molecular dynamics simulations
  • single molecule
  • molecular dynamics
  • ionic liquid
  • solid state
  • dna binding
  • high resolution
  • transcription factor
  • high speed
  • aqueous solution