Comparative Transcriptome Profiles of Human HaCaT Cells in Response to Gynostemma pentaphyllum Extracts Obtained Using Three Independent Methods by RNA Sequencing.
Won Kyong ChoSeung Hye PaekSoo-Yun KimSung Joo JangSak LeeHoseong ChoiYeonhwa JoJeong Hun LeeSang-Hyun MohPublished in: Life (Basel, Switzerland) (2023)
Gynostemma pentaphyllum (GP) is widely used in herbal medicine. In this study, we developed a method for the large-scale production of GP cells using plant tissue culture techniques combined with bioreactors. Six metabolites (uridine, adenosine, guanosine, tyrosine, phenylalanine, and tryptophan) were identified in GP extracts. Transcriptome analyses of HaCaT cells treated with GP extracts using three independent methods were conducted. Most differentially expressed genes (DEGs) from the GP-all condition (combination of three GP extracts) showed similar gene expression on treatment with the three individual GP extracts. The most significantly upregulated gene was LTBP1 . Additionally, 125 and 51 genes were upregulated and downregulated, respectively, in response to the GP extracts. The upregulated genes were associated with the response to growth factors and heart development. Some of these genes encode components of elastic fibers and the extracellular matrix and are associated with many cancers. Genes related to folate biosynthesis and vitamin D metabolism were also upregulated. In contrast, many downregulated genes were associated with cell adhesion. Moreover, many DEGs were targeted to the synaptic and neuronal projections. Our study has revealed the functional mechanisms of GP extracts' anti-aging and photoprotective effects on the skin using RNA sequencing.
Keyphrases
- genome wide
- gene expression
- genome wide identification
- induced apoptosis
- single cell
- dna methylation
- extracellular matrix
- bioinformatics analysis
- cell cycle arrest
- genome wide analysis
- rna seq
- magnetic resonance imaging
- heart failure
- cell adhesion
- endothelial cells
- computed tomography
- atrial fibrillation
- endoplasmic reticulum stress
- copy number
- oxidative stress
- brain injury
- young adults
- signaling pathway
- transcription factor
- drug delivery
- blood brain barrier
- subarachnoid hemorrhage
- soft tissue
- childhood cancer