Protein and RNA dynamical fingerprinting.
Katherine A NiessenMengyang XuDeepu K GeorgeMichael C ChenAdrian R Ferré-D'AmaréEdward H SnellVivian CodyJames PaceMarius SchmidtAndrea G MarkelzPublished in: Nature communications (2019)
Protein structural vibrations impact biology by steering the structure to functional intermediate states; enhancing tunneling events; and optimizing energy transfer. Strong water absorption and a broad continuous vibrational density of states have prevented optical identification of these vibrations. Recently spectroscopic signatures that change with functional state were measured using anisotropic terahertz microscopy. The technique however has complex sample positioning requirements and long measurement times, limiting access for the biomolecular community. Here we demonstrate that a simplified system increases spectroscopic structure to dynamically fingerprint biomacromolecules with a factor of 6 reduction in data acquisition time. Using this technique, polarization varying anisotropy terahertz microscopy, we show sensitivity to inhibitor binding and unique vibrational spectra for several proteins and an RNA G-quadruplex. The technique's sensitivity to anisotropic absorbance and birefringence provides rapid assessment of macromolecular dynamics that impact biology.
Keyphrases
- energy transfer
- density functional theory
- high resolution
- high speed
- molecular docking
- single molecule
- quantum dots
- molecular dynamics simulations
- healthcare
- protein protein
- mental health
- high throughput
- binding protein
- optical coherence tomography
- amino acid
- electronic health record
- molecular dynamics
- big data
- dna binding
- finite element
- nucleic acid
- dna methylation
- bioinformatics analysis
- clinical evaluation