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Cytidine deaminase can deaminate fused pyrimidine ribonucleosides.

Paul T LudfordYao LiShenghua YangYitzhak Tor
Published in: Organic & biomolecular chemistry (2022)
The tolerance of cytidine deaminase (CDA) to expanded heterocycles is explored via three fluorescent cytidine analogues, where the pyrimidine core is fused to three distinct five-membered heterocycles at the 5/6 positions. The reaction between CDA and each analogue is followed by absorption and emission spectroscopy, revealing shorter reaction times for all analogues than the native substrate. Pseudo-first order and Michaelis-Menten kinetic analyses provide insight into the enzymatic deamination reactions and assist in drawing comparison to established structure activity relationships. Finally, inhibitor screening modalities are created for each analogue and validated with zebularine and tetrahydrouridine, two known CDA inhibitors.
Keyphrases
  • molecular docking
  • structure activity relationship
  • solid state
  • high resolution
  • quantum dots
  • living cells
  • single molecule
  • hydrogen peroxide
  • electron transfer
  • clinical evaluation