Development and evaluation of a machine learning-based in-hospital COVID-19 disease outcome predictor (CODOP): A multicontinental retrospective study.
Riku KlénDisha PurohitRicardo Gómez-HuelgasJosé Manuel Casas-RojoJuan Miguel Anton SantosJesús Millán Núñez-CortésCarlos LumbrerasJose-Manuel Ramos-RincónNoelia García BarrioMiguel Pedrera-JiménezAntonio Lalueza BlancoMaría Dolores Martin-EscalanteFrancisco Rivas-RuizMaria Ángeles Onieva-GarcíaPablo YoungJuan Ignacio RamirezEstela Edith Titto OmonteRosmery Gross ArtegaMagdy Teresa Canales BeltránPascual Ruben ValdezFlorencia PuglieseRosa CastagnaIvan A HuespeBruno BoiettiJavier A PollanNico FunkeBenjamin LeidingDavid Gómez-VarelaPublished in: eLife (2022)
New SARS-CoV-2 variants, breakthrough infections, waning immunity, and sub-optimal vaccination rates account for surges of hospitalizations and deaths. There is an urgent need for clinically valuable and generalizable triage tools assisting the allocation of hospital resources, particularly in resource-limited countries. We developed and validate CODOP, a machine learning-based tool for predicting the clinical outcome of hospitalized COVID-19 patients. CODOP was trained, tested and validated with six cohorts encompassing 29223 COVID-19 patients from more than 150 hospitals in Spain, the USA and Latin America during 2020-22. CODOP uses 12 clinical parameters commonly measured at hospital admission for reaching high discriminative ability up to 9 days before clinical resolution (AUROC: 0·90-0·96), it is well calibrated, and it enables an effective dynamic risk stratification during hospitalization. Furthermore, CODOP maintains its predictive ability independently of the virus variant and the vaccination status. To reckon with the fluctuating pressure levels in hospitals during the pandemic, we offer two online CODOP calculators, suited for undertriage or overtriage scenarios, validated with a cohort of patients from 42 hospitals in three Latin American countries (78-100% sensitivity and 89-97% specificity). The performance of CODOP in heterogeneous and geographically disperse patient cohorts and the easiness of use strongly suggest its clinical utility, particularly in resource-limited countries.
Keyphrases
- sars cov
- machine learning
- healthcare
- respiratory syndrome coronavirus
- emergency department
- coronavirus disease
- acute care
- adverse drug
- ejection fraction
- artificial intelligence
- prognostic factors
- deep learning
- big data
- health information
- case report
- gene expression
- copy number
- resistance training
- body composition
- high intensity