Understanding Insulin in the Age of Precision Medicine and Big Data: Under-Explored Nature of Genomics.
Taylor W CookAmy M WilstermannJackson T MitchellNicholas E ArnoldSurender RajasekaranCaleb P BuppJeremy W ProkopPublished in: Biomolecules (2023)
Insulin is amongst the human genome's most well-studied genes/proteins due to its connection to metabolic health. Within this article, we review literature and data to build a knowledge base of Insulin ( INS ) genetics that influence transcription, transcript processing, translation, hormone maturation, secretion, receptor binding, and metabolism while highlighting the future needs of insulin research. The INS gene region has 2076 unique variants from population genetics. Several variants are found near the transcriptional start site, enhancers, and following the INS transcripts that might influence the readthrough fusion transcript INS-IGF2 . This INS-IGF2 transcript splice site was confirmed within hundreds of pancreatic RNAseq samples, lacks drift based on human genome sequencing, and has possible elevated expression due to viral regulation within the liver. Moreover, a rare, poorly characterized African population-enriched variant of INS-IGF2 results in a loss of the stop codon. INS transcript UTR variants rs689 and rs3842753, associated with type 1 diabetes, are found in many pancreatic RNAseq datasets with an elevation of the 3'UTR alternatively spliced INS transcript. Finally, by combining literature, evolutionary profiling, and structural biology, we map rare missense variants that influence preproinsulin translation, proinsulin processing, dimer/hexamer secretory storage, receptor activation, and C-peptide detection for quasi-insulin blood measurements.
Keyphrases
- type diabetes
- copy number
- big data
- rna seq
- genome wide
- single cell
- binding protein
- glycemic control
- endothelial cells
- healthcare
- machine learning
- transcription factor
- public health
- mental health
- pi k akt
- insulin resistance
- intellectual disability
- electronic health record
- adipose tissue
- social media
- long non coding rna
- oxidative stress
- current status
- human health
- skeletal muscle
- loop mediated isothermal amplification