Whole-Exome Sequencing Identifies Genetic Variants for Severe Adolescent Idiopathic Scoliosis in a Taiwanese Population.
Min-Rou LinPo-Hsin ChouKuei-Jung HuangJafit TingChia-Ying LiuWan-Hsuan ChouGan-Hong LinJan-Gowth ChangShiro IkegawaShih-Tien WangWei-Chiao ChangPublished in: Journal of personalized medicine (2022)
Adolescent idiopathic scoliosis (AIS) is a three-dimensional spinal curvature deformity that appears in the adolescent period. In this study, we performed whole-exome sequencing on 11 unrelated Taiwanese patients with a Cobb's angle greater than 40 degrees. Our results identified more than 200 potential pathogenic rare variants, however, most of which were carried only by one individual. By in silico pathogenicity annotation studies, we found that TTN , CLCN1 , and SOX8 were the most important genes, as multiple pathogenic variants were within these genes. Furthermore, biological functional annotation indicated critical roles of these AIS candidate genes in the skeletal muscle. Importantly, a pathogenic variant on SOX8 was shared by over 35% of the patients. These results highlighted TTN , CLCN1 , and SOX8 as the most likely susceptibility genes for severe AIS.
Keyphrases
- genome wide
- transcription factor
- skeletal muscle
- copy number
- stem cells
- end stage renal disease
- genome wide identification
- bioinformatics analysis
- newly diagnosed
- ejection fraction
- chronic kidney disease
- early onset
- young adults
- dna methylation
- peritoneal dialysis
- mental health
- spinal cord
- insulin resistance
- rna seq
- prognostic factors
- genome wide analysis
- type diabetes
- high resolution
- molecular docking
- escherichia coli
- gene expression
- risk assessment
- metabolic syndrome
- pseudomonas aeruginosa
- staphylococcus aureus
- cystic fibrosis
- biofilm formation
- candida albicans