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Are Two Riboses Better Than One? The Case of the Recognition and Activation of Adenosine Receptors.

Teresa GianferraraMatteo PavanDavide BassaniFabrizio VincenziSilvia PasquiniGiovanni BolcatoKatia VaraniGiampiero SpallutoStephanie FedericoStefano Moro
Published in: ChemMedChem (2023)
Traditionally, molecular recognition between the orthosteric site of adenosine receptors and their endogenous ligand occurs with a 1 : 1 stoichiometry. Inspired by previous mechanistic insights derived from supervised molecular dynamics (SuMD) simulations, which suggested an alternative 2 : 1 binding stoichiometry, we synthesized BRA1, a bis-ribosyl adenosine derivative, tested its ability to bind to and activate members of the adenosine receptor family, and rationalized its activity through molecular modeling.
Keyphrases
  • molecular dynamics
  • protein kinase
  • density functional theory
  • machine learning
  • binding protein
  • single molecule