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Pocket-based Lead Optimization Strategy for the Design and Synthesis of Chitinase Inhibitors.

Yawen DongSong HuXi JiangTian LiuYun LingXiongkui HeTian LiuLi Zhang
Published in: Journal of agricultural and food chemistry (2019)
Insect chitinases play an indispensable role in shedding old cuticle during molting. Targeting chitinase inhibition is a promising pest control strategy. Of ChtI, a chitinase from the destructive insect pest Ostrinia furnacalis (Asian corn borer), has been suggested as a potential target for designing green pesticides. A 4,5,6,7-tetrahydrobenzo[ b]thiophene-3-carboxylate scaffold was previously obtained, and further derivatization generated the lead compound 1 as Of ChtI inhibitor. Here, based on the predicted binding mode of compound 1, the pocket-based lead optimization strategy was applied. A series of analogues was synthesized, and their inhibitory activities against Of ChtI were evaluated. Compound 8 with 6- tert-pentyl showed preferential inhibitory activity with a Ki value of 0.71 μM. Their structure-activity relationships suggested that the compound with larger steric hindrance at the 6-nonpolar group was essential for inhibitory activity due to its stronger interactions with surrounding amino acids. This work provides a strategy for designing potential chitinase inhibitors.
Keyphrases
  • amino acid
  • risk assessment
  • squamous cell carcinoma
  • radiation therapy
  • mass spectrometry
  • liquid chromatography
  • dna binding
  • high resolution mass spectrometry
  • structure activity relationship