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Improved characterisation of clinical text through ontology-based vocabulary expansion.

Luke T SlaterWilliam BradlowSimon BallRobert HoehndorfGeorgios V Gkoutos
Published in: Journal of biomedical semantics (2021)
Inter-ontology synonym expansion can lead to a vast increase in the scale of vocabulary available for text mining applications. While the accuracy of the extended vocabulary is not perfect, it nevertheless led to a significantly improved ontology-based characterisation of patients from text in one setting. Furthermore, where run-on error is not acceptable, the technique can be used to provide candidate synonyms which can be checked by a domain expert.
Keyphrases
  • smoking cessation
  • end stage renal disease
  • newly diagnosed
  • ejection fraction
  • prognostic factors
  • patient reported outcomes