Traumatic MicroRNAs: Deconvolving the Signal After Severe Traumatic Brain Injury.
Martin CenteKatarina MatyasovaNikoleta CsicsatkovaAdela TomikovaSara PorubskaYun NiuMarek MajdanPeter FilipcikIgor JurisicaPublished in: Cellular and molecular neurobiology (2022)
History of traumatic brain injury (TBI) represents a significant risk factor for development of dementia and neurodegenerative disorders in later life. While histopathological sequelae and neurological diagnostics of TBI are well defined, the molecular events linking the post-TBI signaling and neurodegenerative cascades remain unknown. It is not only due to the brain's inaccessibility to direct molecular analysis but also due to the lack of well-defined and highly informative peripheral biomarkers. MicroRNAs (miRNAs) in blood are promising candidates to address this gap. Using integrative bioinformatics pipeline including miRNA:target identification, pathway enrichment, and protein-protein interactions analysis we identified set of genes, interacting proteins, and pathways that are connected to previously reported peripheral miRNAs, deregulated following severe traumatic brain injury (sTBI) in humans. This meta-analysis revealed a spectrum of genes closely related to critical biological processes, such as neuroregeneration including axon guidance and neurite outgrowth, neurotransmission, inflammation, proliferation, apoptosis, cell adhesion, and response to DNA damage. More importantly, we have identified molecular pathways associated with neurodegenerative conditions, including Alzheimer's and Parkinson's diseases, based on purely peripheral markers. The pathway signature after acute sTBI is similar to the one observed in chronic neurodegenerative conditions, which implicates a link between the post-sTBI signaling and neurodegeneration. Identified key hub interacting proteins represent a group of novel candidates for potential therapeutic targets or biomarkers.
Keyphrases
- severe traumatic brain injury
- traumatic brain injury
- bioinformatics analysis
- oxidative stress
- dna damage
- cell adhesion
- systematic review
- genome wide
- chemotherapy induced
- spinal cord injury
- mild cognitive impairment
- network analysis
- cognitive impairment
- gene expression
- meta analyses
- genome wide identification
- signaling pathway
- single molecule
- white matter
- single cell
- cell death
- dna repair
- cell proliferation
- protein kinase
- cell cycle arrest
- multiple sclerosis
- human health
- drug induced
- transcription factor
- genome wide analysis
- climate change
- case control