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Comparative analysis of IR-Biotyper, MLST, cgMLST, and WGS for clustering of vancomycin-resistant Enterococcus faecium in a neonatal intensive care unit.

Sunggyun ParkNam Hee Ryoo
Published in: Microbiology spectrum (2024)
, comparing it with MLST, cgMLST, and WGS. We proposed a cutoff that showed the highest concordance compared to WGS and assessed the within-run precision of the IR-Biotyper by evaluating the consistency in genetically identical strain when repeated in the same run.
Keyphrases
  • preterm infants
  • methicillin resistant staphylococcus aureus
  • single cell
  • biofilm formation
  • rna seq
  • pseudomonas aeruginosa
  • escherichia coli