Login / Signup

CVE: an R package for interactive variant prioritisation in precision oncology.

Andreas MockSuzanne MurphyJames MorrisFrancesco MarassNitzan RosenfeldCharles E Massie
Published in: BMC medical genomics (2017)
The CVE package allows interactive variant prioritisation to expedite the analysis of cancer sequencing studies. Our framework also includes the prioritisation of druggable targets, allows exploratory analysis of tissue specific networks and is extendable for specific applications by virtue of its modular design. We encourage the use of CVE within translational research studies and molecular tumour boards. The CVE package is available via Bioconductor ( http://bioconductor.org/packages/CVE/ ).
Keyphrases
  • case control
  • papillary thyroid
  • palliative care
  • single cell
  • squamous cell
  • squamous cell carcinoma
  • lymph node metastasis