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High tumor amplification burden is associated with TP53 mutations in the pan-cancer setting.

Rushikesh S JoshiAmelie BoichardJacob J AdashekRazelle Kurzrock
Published in: Cancer biology & therapy (2022)
Next-generation sequencing data is fundamentally changing the clinical management of patients with cancer. The most frequent genomic alterations in malignancy are mutations and amplifications, with a subset of tumors having multiple amplifications - "amplificators". We sought to understand the molecular correlates of high tumor amplification burden in a pan-cancer context. Using both national registries and a single-institution dataset, our results demonstrate that cancers with TP53 mutations (as compared to those with wild-type TP53 ) exhibited significantly higher tumor amplification burden across all datasets. Amplifications, generally associated with overexpression, may be potentially actionable secondary consequences of TP53 mutations.
Keyphrases
  • papillary thyroid
  • nucleic acid
  • wild type
  • squamous cell
  • risk factors
  • copy number
  • cell proliferation
  • lymph node metastasis
  • electronic health record
  • dna methylation
  • big data
  • single cell
  • deep learning