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Toward collaborative open data science in metabolomics using Jupyter Notebooks and cloud computing.

Kevin M MendezLeighton PritchardStacey N ReinkeDavid I Broadhurst
Published in: Metabolomics : Official journal of the Metabolomic Society (2019)
This tutorial introduces the concept of interactive web-based computational laboratory notebooks. The reader is guided through a set of experiential tutorials specifically targeted at metabolomics researchers, based around the Jupyter Notebook web application, GitHub data repository, and Binder cloud computing platform.
Keyphrases
  • electronic health record
  • mass spectrometry
  • big data
  • public health
  • minimally invasive
  • high throughput
  • cancer therapy
  • quality improvement
  • drug delivery
  • deep learning