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The complete chloroplast genome sequence of Lilium saccatum S. Yun Liang (Liliaceae, Lilieae) and its phylogenetic analysis.

Xuan ZhouJian-Hua MaJun-Yi ZhangLi LuanLin LiYun-Dong GaoYu Feng
Published in: Mitochondrial DNA. Part B, Resources (2024)
Lilium saccatum is a species of ornamental plant found in southeastern Xizang, China. In the present study, the complete chloroplast (cp) genome of L. saccatum was sequenced using next-generation sequencing (NGS). The de novo assembled cp genome was 151,839 bp in length, including a pair of inverted repeat regions (IRs; 26,421 bp), a small single-copy region (SSC; 17,528 bp), and a large single-copy region (LSC; 81,469 bp). The cp genome encodes 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. The total GC content of the cp genome was 37.0%. Phylogenetic analysis of 24 cp genomes revealed that L. saccatum was closely related to L. souliei . This study could provide fundamental information for the phylogenomics and utilization of Lilium .
Keyphrases
  • genome wide
  • dna methylation
  • copy number
  • genome wide identification
  • genome wide analysis
  • healthcare
  • gene expression
  • arabidopsis thaliana
  • transcription factor
  • high resolution