scPathoQuant: a tool for efficient alignment and quantification of pathogen sequence reads from 10× single cell sequencing datasets.

Leanne S WhitmoreJennifer Tisoncik-GoMichael Gale

Published in: Bioinformatics (Oxford, England) (2024)

The SPQ package is available software accessible at https://github.com/galelab/scPathoQuant (DOI 10.5281/zenodo.10463670) with test codes and datasets available https://github.com/galelab/Whitmore_scPathoQuant_testSets (DOI 10.5281/zenodo.10463677) to serve as a resource for the community.

Keyphrases

single cell
rna seq
high throughput
mental health
healthcare
candida albicans
data analysis
high throughput sequencing