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Machine Learning to Identify Critical Biomarker Profiles in New SARS-CoV-2 Variants.

Christoph SchatzLudwig KnablHye Kyung LeeRita SeeboeckDorothee von LaerEliott LafonWegene BorenaHarald ManggeFlorian PrüllerAdelina QerimiDoris WilflingsederWilfried PoschJohannes Haybaeck
Published in: Microorganisms (2024)
The global dissemination of SARS-CoV-2 resulted in the emergence of several variants, including Alpha, Alpha + E484K, Beta, and Omicron. Our research integrated the study of eukaryotic translation factors and fundamental components in general protein synthesis with the analysis of SARS-CoV-2 variants and vaccination status. Utilizing statistical methods, we successfully differentiated between variants in infected individuals and, to a lesser extent, between vaccinated and non-vaccinated infected individuals, relying on the expression profiles of translation factors. Additionally, our investigation identified common causal relationships among the translation factors, shedding light on the interplay between SARS-CoV-2 variants and the host's translation machinery.
Keyphrases
  • sars cov
  • copy number
  • respiratory syndrome coronavirus
  • machine learning
  • gene expression
  • big data