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Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader 'Candidatus Leucobacter sulfamidivorax' strain GP.

Ana C ReisBoris A KolvenbachMohamed ChamiLuís GalesConceição EgasPhilippe F-X CorviniOlga C Nunes
Published in: BMC genomics (2019)
Comparative genomics of the genus Leucobacter suggested the absence of some genes encoding for important metabolic traits in strain GP. Nevertheless, although media and culture conditions were tailored to supply its potential metabolic needs, these conditions were insufficient to isolate the PR1-dependent actinobacterium further. This study gives important insights regarding strain GP metabolism; however, gene expression and functional studies are necessary to characterize and further isolate strain GP. Based on our data, we propose to classify strain GP in a provisional new species within the genus Leucobacter, 'Candidatus Leucobacter sulfamidivorax'.
Keyphrases
  • gene expression
  • genome wide
  • dna methylation
  • electronic health record
  • machine learning
  • transcription factor
  • deep learning