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Bioassay-Guided Alkaloids Isolation from Camellia sinensis and Colchicum luteum : In Silico and In Vitro Evaluations for Protease Inhibition.

Mohammad AatifMuhammad Asam RazaMohamed El OirdiMohd FarhanMuhammad Waseem MumtazMuhammad HamayunAdnan AshrafGhazala Muteeb
Published in: Molecules (Basel, Switzerland) (2023)
Bioassay-guided isolation from Camellia sinensis (Theaceae) and Colchicum luteum (Liliaceae) utilizing an in vitro model of protease assay revealed colchicine ( 1 ) and caffeine (2) from chloroform fractions, respectively. Their structures were validated using spectral techniques. The purified compounds were further optimized with Gaussian software utilizing the B3LYP functional and 6-31G(d,p) basis set. The result files were utilized to determine several global reactivity characteristics to explain the diverse behavior of the compounds. Colchicine ( 1 ) showed a higher inhibition of protease activity (63.7 ± 0.5 %age with IC 50 = 0.83 ± 0.07 mM), compared with caffeine ( 2 ) (39.2 ± 1.3 %age). In order to determine the type of inhibition, compound 1 was further studied, and, based on Lineweaver-Burk/Dixon plots and their secondary replots, it was depicted that compound 1 was a non-competitive inhibitor of this enzyme, with a Ki value of 0.690 ± 0.09 mM. To elucidate the theoretical features of protease inhibition, molecular docking studies were performed against serine protease (PDB #1S0Q), which demonstrated that compound 1 had a strong interaction with the different amino acid residues located on the active site of this understudied enzyme, with a high docking score of 16.2 kcal/mol.
Keyphrases
  • molecular docking
  • molecular dynamics simulations
  • mass spectrometry
  • magnetic resonance
  • molecular dynamics
  • data analysis
  • high resolution