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Tigmint: correcting assembly errors using linked reads from large molecules.

Shaun D JackmanLauren CoombeJustin ChuRene L WarrenBenjamin P VandervalkSarah YeoZhuyi XueHamid MohamadiJoerg BohlmannSteven J M JonesInanc Birol
Published in: BMC bioinformatics (2018)
Scaffolding an assembly that has been corrected with Tigmint yields a final assembly that is both more correct and substantially more contiguous than an assembly that has not been corrected. Using single-molecule sequencing in combination with linked reads enables a genome sequence assembly that achieves both a high sequence contiguity as well as high scaffold contiguity, a feat not currently achievable with either technology alone.
Keyphrases
  • single molecule
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  • gene expression
  • living cells
  • dna methylation
  • high speed