Temporal lineage replacements and dominance of imported variants of concern during the COVID-19 pandemic in Kenya.

Gathii KimitaJosphat NyatayaEsther OmuseniFaith Sigei Allan LemtudoEric MuthanjeBrian AndikaRehema LiyaiRachel GithiiClement MasakhweStephen OcholaGeorge AwindaCarol KifudeBeth MutaiRobert M GatataJohn N Waitumbi

Published in: Communications medicine (2022)

The data highlights the importance of genome surveillance in determining circulating variants to aid interpretation of phenotypes such as transmissibility, virulence and/or resistance to therapeutics/vaccines.

Keyphrases

copy number
escherichia coli
pseudomonas aeruginosa
public health
staphylococcus aureus
electronic health record
genome wide
small molecule
antimicrobial resistance
biofilm formation
single cell
big data
machine learning
data analysis