racoon_clip-a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data.

Published in: Bioinformatics advances (2024)

racoon_clip is implemented as a Snakemake-powered command line tool (Snakemake version ≥7.22, Python version ≥3.9). The latest release can be downloaded from GitHub (https://github.com/ZarnackGroup/racoon_clip/tree/main) and installed via pip. A detailed documentation, including installation, usage, and customization, can be found at https://racoon-clip.readthedocs.io/en/latest/. The example datasets can be downloaded from the Short Read Archive (SRA; iCLIP: SRR5646576, SRR5646577, SRR5646578) or the ENCODE Project (eCLIP: ENCSR202BFN).

Keyphrases

endoscopic submucosal dissection
electronic health record
psychometric properties
quality improvement
big data
rna seq
advance care planning