GENETEX-a GENomics Report TEXt mining R package and Shiny application designed to capture real-world clinico-genomic data.

Published in: JAMIA open (2021)

GENETEX is freely available under the Massachusetts Institute of Technology license and can be obtained from GitHub (https://github.com/TheMillerLab/genetex). GENETEX is executed in R and deployed as a Shiny application for non-R users. It produces high-fidelity abstraction of CGD in a fraction of the time.

Keyphrases

electronic health record
big data
copy number
machine learning
gene expression
dna methylation
deep learning
data analysis