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Predicting instances of pathway ontology classes for pathway integration.

Lucy Lu WangG Thomas HaymanJennifer R SmithMonika TutajMary E ShimoyamaJohn H Gennari
Published in: Journal of biomedical semantics (2019)
The neural predictive model produced meaningful class recommendations that assisted PW curators in selecting appropriate class mappings for Reactome pathways. Our methods can be used to reduce the manual effort associated with ontology curation, and more broadly, for augmenting the curators' ability to organize and integrate data from pathway databases using the Pathway Ontology.
Keyphrases
  • big data
  • electronic health record
  • clinical practice
  • artificial intelligence