Assessing Spectral Analysis of Phytoconstituents and Their In Silico Interactions with Target Proteins in Plant Seed Extracts.
Venkatadri BabuJ Irshad AhamedAgastian PaulSajad AliIrfan Ahmad RatherJamal S M SabirPublished in: Plants (Basel, Switzerland) (2023)
The pharmacological and preventive attributes of extracts from vegetable seeds have garnered widespread recognition within the scientific community. This study systematically assessed the in vitro antibacterial, antioxidant, and anti-breast cancer properties of phytochemicals present in various solvent-based vegetable seed extracts. We also conducted molecular docking simulations to ascertain their interactions with specific target proteins. Besides, nine distinct chemical constituents were identified using gas chromatography-mass spectrometry (GCMS). Remarkably, the ethyl acetate extract exhibited robust inhibitory effects against Gram-positive and Gram-negative bacterial strains. Furthermore, its capacity for 2,2-diphenyl-1-picrylhydrazyl (DPPH) scavenging was found to be noteworthy, with an IC 50 value of 550.82 ± 1.7 µg/mL, representing a scavenging efficiency of 64.1 ± 2.8%. Additionally, the ethyl acetate extract demonstrated significant hydrogen peroxide (H 2 O 2 ) scavenging activity, with a maximal scavenging rate of 44.1 ± 1.70% (IC 50 ) at a concentration of 761.17 ± 1.8 µg/mL. Intriguingly, in vitro cytotoxicity assays against human breast cancer (MCF-7) cells revealed varying levels of cell viability at different extract concentrations, suggesting potential anticancer properties. Importantly, these ethyl acetate extracts did not display toxicity to L929 cells across the concentration range tested. Subsequently, we conducted in-silico molecular docking experiments utilizing Discovery Studio 4.0 against the c-Met kinase protein (hepatocyte growth factor; PDB ID: 1N0W). Among the various compounds assessed, 3,4-Dihydroxy-1,6-bis-(3-methoxy-phenyl)-hexa-2,4-diene-1,6-dione exhibited a notable binding energy of -9.1 kcal/mol, warranting further investigation into its potential anticancer properties, clinical applications, and broader pharmacological characteristics.
Keyphrases
- molecular docking
- gram negative
- hydrogen peroxide
- oxidative stress
- growth factor
- induced apoptosis
- ionic liquid
- molecular dynamics simulations
- anti inflammatory
- gas chromatography mass spectrometry
- multidrug resistant
- cell cycle arrest
- healthcare
- high throughput
- nitric oxide
- escherichia coli
- molecular dynamics
- magnetic resonance imaging
- cell death
- small molecule
- optical coherence tomography
- magnetic resonance
- single cell
- risk assessment
- computed tomography
- tyrosine kinase
- blood pressure
- cell proliferation
- protein kinase
- breast cancer cells
- climate change
- human health
- solid phase extraction
- dna binding