Genome-wide analysis, transcription factor network approach and gene expression profile of GH3 genes over early somatic embryogenesis in Coffea spp.
Renan Terassi PintoNatália Chagas FreitasWesley Pires Flausino MáximoThiago Bergamo CardosoDébora de Oliveira PrudenteLuciano Vilela PaivaPublished in: BMC genomics (2019)
Therefore, one out of the GH3 members may be influencing on coffee somatic embryogenesis by auxin conjugation with acidic amino acids, which leads to the phytohormone degradation. It is an indicative that this gene can serve as a molecular marker for coffee cells with embryogenic potential and needs to be further studied on how much determinant it is for this process. This work, together with future studies, can support the improvement of coffee clonal propagation through in vitro derived somatic embryos.
Keyphrases
- genome wide analysis
- genome wide identification
- transcription factor
- copy number
- gene expression
- genome wide
- induced apoptosis
- amino acid
- dna methylation
- growth hormone
- cell cycle arrest
- cell death
- risk assessment
- ionic liquid
- single molecule
- cell proliferation
- arabidopsis thaliana
- climate change
- endoplasmic reticulum stress
- pi k akt