Test Performance and Potential Clinical Utility of the GenMark Dx ePlex Blood Culture Identification Gram-Negative Panel.
T P McCartyP CumagunJ MeederD MoatesW S EdwardsJ HutchinsonRachael A LeeSixto M LealPublished in: Microbiology spectrum (2023)
The test performance and potential clinical utility of the ePlex blood culture identification Gram-negative (BCID-GN) panel was evaluated relative to matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry on bacterial isolates and conventional antimicrobial susceptibility testing. The majority (106/108, 98.1%) of GN bacteria identified by MALDI were on the BCID-GN panel, and valid tests (107/108, 99.1%) yielded results on average 26.7 h earlier. For all valid tests with on-panel organisms, the positive percent agreement was 102/105 (97.2%) with 3 false negatives and the negative percent agreement was 105/105. Chart review ( n = 98) showed that in conjunction with Gram stain results, negative pan-Gram-positive (GP) markers provided the opportunity to discontinue GP antibiotic coverage in 63/98 (64.3%) cases on average 26.2 h earlier. Only 8/12 (66.7%) Enterobacterales isolates with resistance to third-generation cephalosporins harbored the CTX-M gene. In contrast, 8/8 CTX-M + samples yielded a resistant isolate. Detection of 1 Stenotrophomonas maltophilia (18 h), 1 OXA23/48 + Acinetobacter baumannii (52.4 h), and 3 CTX-M + Enterobacterales isolates on ineffective treatment (47.1 h) and 1 on suboptimal therapy (72.6 h) would have additionally enabled early antimicrobial optimization in 6/98 (6.1%) patients. IMPORTANCE The GenMark Dx ePlex rapid blood culture diagnostic system enables earlier time to identification of antimicrobial-resistant Gram-negative bacteria causing bloodstream infections. Its ability to rule out Gram-positive bacteria enabled early discontinuation of unnecessary antibiotics in 63/98 (64.3%) cases on average 26.2 h earlier. Detection of bacteria harboring the CTX-M gene as well as early identification of highly resistant bacteria such as Stenotrophomonas maltophilia and Acinetobacter baumannii enabled optimization of ineffective therapy in 6/98 (6.1%) patients. Its implementation in clinical microbiology laboratories optimizes therapy and improves patient care.
Keyphrases
- gram negative
- multidrug resistant
- acinetobacter baumannii
- klebsiella pneumoniae
- mass spectrometry
- drug resistant
- end stage renal disease
- bioinformatics analysis
- liquid chromatography
- loop mediated isothermal amplification
- newly diagnosed
- staphylococcus aureus
- chronic kidney disease
- genome wide
- ejection fraction
- primary care
- prognostic factors
- gene expression
- pseudomonas aeruginosa
- high resolution
- stem cells
- high performance liquid chromatography
- magnetic resonance imaging
- peritoneal dialysis
- escherichia coli
- quality improvement
- genetic diversity
- dna methylation
- capillary electrophoresis
- replacement therapy
- patient reported outcomes
- affordable care act
- risk assessment
- transcription factor
- health insurance