[GIS: CAPABILITIES OF DATA ANALYSIS OF PHENO- AND GENOTYPING Of EL TOR 01 SEROGROUP CHOLERA VIBRIOS ISOLATED FROM AQUATIC OBJECTS OF THE ENVIRONMENT IN RUSSIA FEDERATION].

D A LevchenkoV D KruglikovA S VodopianovS V TitovaL V ArkhangelskayaN B NepomnyaschayaM I Ezhova

Published in: Zhurnal mikrobiologii, epidemiologii i immunobiologii (2019)

Analysis of multi-year data on aquatic V cholerae Ο1 strains in country's subject was carried out using GIS. Apossibility of systematization ofphenotypes of the isolated strains by defined parameters was shown. An experimental program for detectior of presence/lack ofvarious genes and their combinations for genotyping was developed. Conclusion GIS was established to allow to carry out analysis of phenotypes by defined parameters, as well as implement approximate systematization of genotypes of atoxigenic strains of cholera vibrios Ο1 by optimally sufficient detection of 14 genes.

Keyphrases

genome wide
escherichia coli
risk assessment
electronic health record
high throughput
dna methylation
big data
quality improvement
bioinformatics analysis
genetic diversity
data analysis
transcription factor
label free