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Evolution in Sinocyclocheilus cavefish is marked by rate shifts, reversals, and origin of novel traits.

Ting-Ru MaoYe-Wei LiuMadhava MeegaskumburaJian YangGajaba EllepolaGayani SenevirathneCheng-Hai FuJoshua B GrossMarcio Roberto Pie
Published in: BMC ecology and evolution (2021)
Sinocyclocheilus occupied cave habitats in response to drying associated with aridification of China during late Miocene and the Pliocene. The prominent cave-adaptations (eye-regression, horn-evolution) occur in clades associated with the extensive subterranean cave system in Guangxi and Guizhou provinces. Integration of morphology, phylogeny, rate analyses, molecular-dating and distribution show not only several remarkable patterns of evolution, but also interesting exceptions to these patterns signifying the diversification of Sinocyclocheilus as an invaluable model system to explore evolutionary novelty.
Keyphrases
  • genome wide
  • high intensity
  • gene expression
  • dna methylation
  • single molecule