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Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow.

Erik Scott WrightDavid A Baum
Published in: BMC genomics (2018)
The existence of bacterial taxa is justified by considering average relatedness across the entire genome, as captured by exclusivity, but is rejected if one requires unanimous agreement of all parts of the genome. We propose using exclusivity to delimit taxa and conventional genome similarity thresholds to assign bacterial taxa to the species rank. This approach recognizes species that are phylogenetically meaningful, while also establishing some degree of comparability across species-ranked taxa in different bacterial clades.
Keyphrases
  • genome wide
  • genetic diversity
  • gene expression
  • copy number
  • transcription factor