Unveiling the Mechanisms Underlying the Immunotherapeutic Potential of Gene-miRNA and Drugs in Head and Neck Cancer.
null DanishuddinMd Azizul HaqueR K Brojen SinghRakesh AryaPooja SinghJeong-Sang LeeJong-Joo KimKeun-Woo LeeTae Sung JungPublished in: Pharmaceuticals (Basel, Switzerland) (2024)
Head and neck cancer ranks as the sixth-most common malignancy worldwide, characterized by high mortality and recurrence rates. Research studies indicate that molecular diagnostics play a crucial role in the early detection and prognostic evaluation of these diseases. This study aimed to identify potential biomarkers for head and neck cancer and elucidate their interactions with miRNAs and possible therapeutic drugs. Four drivers, namely, FN1 , IL1A , COL1A1 , and MMP9 , were identified using network biology and machine learning approaches. Gene set variation analysis (GSVA) showed that these genes were significantly involved in different biological processes and pathways, including coagulation, UV-response-down, apoptosis, NOTCH signaling, Wnt-beta catenin, and other signal pathways. The diagnostic value of these hub genes was validated using receiver operating characteristic (ROC) curves. The top interactive miRNAs, including miR-128-3p , miR-218-5p , miR-214-3p , miR-124-3p , miR-129-2-3p , and miR-1-3p , targeted the key genes. Furthermore, the interaction between the key genes and drugs was also identified. In summary, the key genes and miRNAs or drugs reported in this study might provide valuable information for potential biomarkers to increase the prognosis and diagnosis of head and neck cancer.
Keyphrases
- genome wide
- genome wide identification
- bioinformatics analysis
- machine learning
- genome wide analysis
- cell proliferation
- dna methylation
- transcription factor
- oxidative stress
- copy number
- stem cells
- cell death
- coronary artery disease
- cardiovascular disease
- type diabetes
- gene expression
- risk factors
- social media
- single molecule
- big data
- cardiovascular events
- human health
- data analysis