Genome-wide screen of otosclerosis in population biobanks: 27 loci and shared associations with skeletal structure.
Joel T RämöTuomo Tapio Johannes KiiskinenRichard SeistKristi KrebsMasahiro KanaiJuha KarjalainenMitja KurkiEija HämäläinenPaavo HäppöläAki S HavulinnaHeidi Hautakangasnull nullReedik MägiPriit PaltaTõnu EskoAndres MetspaluMatti PirinenKonrad J KarczewskiSamuli RipattiLili A MilaniKonstantina M StankovicAntti Aarni MäkitieMark J DalyAarno PalotiePublished in: Nature communications (2023)
Otosclerosis is one of the most common causes of conductive hearing loss, affecting 0.3% of the population. It typically presents in adulthood and half of the patients have a positive family history. The pathophysiology of otosclerosis is poorly understood. A previous genome-wide association study (GWAS) identified a single association locus in an intronic region of RELN. Here, we report a meta-analysis of GWAS studies of otosclerosis in three population-based biobanks comprising 3504 cases and 861,198 controls. We identify 23 novel risk loci (p < 5 × 10 -8 ) and report an association in RELN and three previously reported candidate gene or linkage regions (TGFB1, MEPE, and OTSC7). We demonstrate developmental stage-dependent immunostaining patterns of MEPE and RUNX2 in mouse otic capsules. In most association loci, the nearest protein-coding genes are implicated in bone remodelling, mineralization or severe skeletal disorders. We highlight multiple genes involved in transforming growth factor beta signalling for follow-up studies.
Keyphrases
- genome wide association study
- genome wide
- dna methylation
- transforming growth factor
- copy number
- end stage renal disease
- epithelial mesenchymal transition
- chronic kidney disease
- hearing loss
- prognostic factors
- transcription factor
- early onset
- peritoneal dialysis
- high throughput
- depressive symptoms
- gene expression
- soft tissue
- genome wide association
- protein protein
- early life
- hiv testing