LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data.

Yanan RenTing-You WangLeah C AndertonQi CaoRendong Yang

Published in: BMC genomics (2021)

LncGSEA allows researchers to infer lncRNA regulatory pathways directly from clinical samples in oncology. LncGSEA is written in R, and is freely accessible at https://github.com/ylab-hi/lncGSEA .

Keyphrases

single cell
papillary thyroid
long non coding rna
palliative care
rna seq
long noncoding rna
electronic health record
gene expression
transcription factor
genome wide
big data
squamous cell carcinoma
lymph node metastasis
dna methylation
childhood cancer