δ-Azaproline and Its Oxidized Variants.
Yassin M ElbatrawiKyle P PedrettyNicole GiddingsH Lee WoodcockJuan R Del VallePublished in: The Journal of organic chemistry (2020)
Peptides featuring backbone N-amino substituents exhibit unique conformational properties owing to additional electrostatic, hydrogen-bonding, and steric interactions. Here, we describe the synthesis and conformational analysis of three δ-azaproline derivatives as potential proline surrogates. Our studies demonstrate stereoelectronic tuning of heterocyclic ring pucker, cis/trans amide propensity, and amide isomerization barriers within a series of oxidation state variants. A combination of NMR, X-ray diffraction, and density functional theory calculations shows that electron density and hybridization at the δ position play a dominant role in the conformational preferences of each analogue. Both δ-azaproline and γ,δ-dehydro-δ-azaproline exhibit strong trans amide rotamer propensities irrespective of ring conformation, while a novel residue, γ-oxo-δ-azaproline, features rapid amide isomerization kinetics and isoenergetic amide bond geometries influenced by torsional strain and H-bonding interactions. The introduction of the δ heteroatom in each residue allows the decoupling of structural effects that are typically linked in proline and its pyrrolidine-substituted analogues. δ-Azaproline derivatives thus represent useful probes of prolyl amide isomerism with potential applications in peptidomimetic drug design and protein folding.
Keyphrases
- molecular dynamics simulations
- molecular dynamics
- density functional theory
- single molecule
- molecular docking
- high resolution
- copy number
- amino acid
- small molecule
- magnetic resonance imaging
- gene expression
- hydrogen peroxide
- living cells
- mass spectrometry
- nucleic acid
- climate change
- photodynamic therapy
- computed tomography
- solid state
- human health
- adverse drug
- fluorescence imaging
- quantum dots
- dual energy