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Harmonization of supervised machine learning practices for efficient source attribution of Listeria monocytogenes based on genomic data.

Pierluigi CastelliAndrea De RuvoAndrea BucciacchioNicola D'AlterioCesare CammaAdriano Di PasqualeNicolas Radomski
Published in: BMC genomics (2023)
In addition to recommendations about machine learning practices for L. monocytogenes source attribution based on genomic data, the present study also provides a freely available workflow to solve other balanced or unbalanced multiclass phenotypes from binary and categorical genomic profiles of other microorganisms without source code modifications.
Keyphrases
  • machine learning
  • big data
  • electronic health record
  • listeria monocytogenes
  • copy number
  • primary care
  • artificial intelligence
  • healthcare
  • genome wide