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Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli.

Elke R DuellPaul M D'AgostinoNicole ShapiroTanja WoykeThilo M FuchsTobias A M Gulder
Published in: Microbial cell factories (2019)
Genome mining of all available genomes within the NCBI and JGI IMG databases led to the identification of a wealth of sod-like pathways which may be responsible for producing a range of structurally unknown sodorifen analogs. Introduction of the S. plymuthica WS3236 sodorifen BGC into the fast-growing heterologous expression host E. coli with a very low VOC background led to a significant increase in both sodorifen product yield and purity compared to the native producer. By providing a reliable, high-level production system, this study sets the stage for future investigations of the biological role and function of sodorifen and for functionally unlocking the bioinformatically identified putative sod-like pathways.
Keyphrases
  • escherichia coli
  • genome wide
  • amyotrophic lateral sclerosis
  • copy number
  • current status
  • binding protein
  • deep learning
  • long non coding rna
  • machine learning