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T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees.

Ignazio CarboneJames B WhiteJolanta MiadlikowskaA Elizabeth ArnoldMark A MillerNicolas MagainJana M U RenFrançois Lutzoni
Published in: Microbiology resource announcements (2019)
The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.
Keyphrases
  • circulating tumor
  • cell free
  • psychometric properties
  • single molecule
  • capillary electrophoresis
  • ultrasound guided
  • microbial community
  • genome wide
  • gene expression
  • genetic diversity