Bioactivity and Metabolome Mining of Deep-Sea Sediment-Derived Microorganisms Reveal New Hybrid PKS-NRPS Macrolactone from Aspergillus versicolor PS108-62.
Florent MagotGwendoline Van SoenLarissa BuedenbenderFengjie LiThomas SoltwedelLaura GrausoAlfonso MangoniMartina BlümelDeniz TasdemirPublished in: Marine drugs (2023)
Despite low temperatures, poor nutrient levels and high pressure, microorganisms thrive in deep-sea environments of polar regions. The adaptability to such extreme environments renders deep-sea microorganisms an encouraging source of novel, bioactive secondary metabolites. In this study, we isolated 77 microorganisms collected by a remotely operated vehicle from the seafloor in the Fram Strait, Arctic Ocean (depth of 2454 m). Thirty-two bacteria and six fungal strains that represented the phylogenetic diversity of the isolates were cultured using an One-Strain-Many-Compounds (OSMAC) approach. The crude EtOAc extracts were tested for antimicrobial and anticancer activities. While antibacterial activity against methicillin-resistant Staphylococcus aureus (MRSA) and Enterococcus faecium was common for many isolates, only two bacteria displayed anticancer activity, and two fungi inhibited the pathogenic yeast Candida albicans . Due to bioactivity against C. albicans and rich chemical diversity based on molecular network-based untargeted metabolomics, Aspergillus versicolor PS108-62 was selected for an in-depth chemical investigation. A chemical work-up of the SPE-fractions of its dichloromethane subextract led to the isolation of a new PKS-NRPS hybrid macrolactone, versicolide A ( 1 ), a new quinazoline (-)-isoversicomide A ( 3 ), as well as three known compounds, burnettramic acid A ( 2 ), cyclopenol ( 4 ) and cyclopenin ( 5 ). Their structures were elucidated by a combination of HRMS, NMR, [α] D , FT-IR spectroscopy and computational approaches. Due to the low amounts obtained, only compounds 2 and 4 could be tested for bioactivity, with 2 inhibiting the growth of C. albicans (IC 50 7.2 µg/mL). These findings highlight, on the one hand, the vast potential of the genus Aspergillus to produce novel chemistry, particularly from underexplored ecological niches such as the Arctic deep sea, and on the other, the importance of untargeted metabolomics for selection of marine extracts for downstream chemical investigations.
Keyphrases
- candida albicans
- methicillin resistant staphylococcus aureus
- mass spectrometry
- biofilm formation
- staphylococcus aureus
- climate change
- cell wall
- high resolution
- ms ms
- high resolution mass spectrometry
- escherichia coli
- optical coherence tomography
- liquid chromatography
- heavy metals
- magnetic resonance
- single molecule
- endothelial cells
- human health
- signaling pathway
- risk assessment
- genetic diversity
- solid state
- gene expression
- genome wide
- saccharomyces cerevisiae
- ionic liquid
- gas chromatography mass spectrometry
- solid phase extraction
- pseudomonas aeruginosa
- dna methylation
- tandem mass spectrometry
- simultaneous determination